PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0686s0035.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 221aa    MW: 24495.7 Da    PI: 8.5811
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0686s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.87.7e-38111111100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+ dCv+apyf +e+ p++fa++hk+FGasnv+k+l+++p ++r++++ +++y+Aear++dPvyG+v+++++lqqq++ 
  Cagra.0686s0035.1.p  11 PCGACKFLRRKCVFDCVFAPYFSSEEsPARFAAIHKVFGASNVSKILQHVPIQDRHEVVVTMAYQAEARLHDPVYGCVSHVFALQQQVAF 100
                          7*********************997769************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+l +lk++
  Cagra.0686s0035.1.p 101 LQAQLMQLKAN 111
                          ****9998865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.82910112IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3711109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTSNGSGTGS PCGACKFLRR KCVFDCVFAP YFSSEESPAR FAAIHKVFGA SNVSKILQHV  60
PIQDRHEVVV TMAYQAEARL HDPVYGCVSH VFALQQQVAF LQAQLMQLKA NLAHQTISTV  120
AGDLSNRSEM TWQRTSGYTI PYMPYSHENP NKPVSPVSST ESLEYSHTSS QVTTGVQDIQ  180
TGRRFGFHHQ EGYPNKKRSV SYCNTDLGEL QALALRMMRN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292407.11e-162hypothetical protein CARUB_v10018619mg
SwissprotQ9SLB72e-98LBD16_ARATH; LOB domain-containing protein 16
TrEMBLR0HJB81e-162R0HJB8_9BRAS; Uncharacterized protein
STRINGscaffold_403099.14e-96(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-84lateral organ boundaries-domain 16