PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0612s0086.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 176aa    MW: 19963.9 Da    PI: 9.9087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0612s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-0593115123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+++F +   L  H+r+H
  Cagra.0612s0086.1.p  93 HKCSICDQVFGTGQALGGHMRKH 115
                          79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-104873IPR007087Zinc finger, C2H2
SuperFamilySSF576673.54E-648115No hitNo description
PROSITE profilePS501579.7644976IPR007087Zinc finger, C2H2
SMARTSM003550.744971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139122.6E-1193117IPR007087Zinc finger, C2H2
PROSITE profilePS501579.03793120IPR007087Zinc finger, C2H2
SMARTSM003550.006293115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRDRSDYEE SMQHVDIVRS LMMLSQSFVV KQIDVKQSTG SKNNHNNHFE CKTCNRIFDS  60
FQALGGHRAS HKKPKLSVDH EQVKHRKSEN DMHKCSICDQ VFGTGQALGG HMRKHRASML  120
TEQSAIPSVV FPRPVMNRCN SSKKILDLNL TPLENDLVTI FGKNMAPQID LKFVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17186KKPKLSVDHEQVKHRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0612s0086.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329661e-169AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBankCP0026861e-169CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291929.11e-126zinc finger protein ZAT11
SwissprotQ9SLD44e-72ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLR0FQJ51e-125R0FQJ5_9BRAS; Uncharacterized protein
STRINGCagra.0612s0086.1.p1e-128(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-116C2H2 family protein