PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0430s0055.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 332aa    MW: 36990.6 Da    PI: 9.0277
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0430s0055.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.4e-104787545
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                         k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Cagra.0430s0055.2.p 47 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 87
                         7889************************9877777766555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-83790No hitNo description
SMARTSM003381.8E-643106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4384589IPR004827Basic-leucine zipper domain
PfamPF001706.9E-74787IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-74790No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141441.4E-34129204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADTSSRTDV STDGDTDHRD LGSERGQMML PAASDSSDRS KDKLDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGVFISSS GDQAHSTGGN GALAFDAEHS  120
RWLEEKNRQM NELRSALNAH AGDTELRTIV DGVMAHYEEL FRIKSNAAKN DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KLLANQLEPM TERQVMGLNS LQQTSQQAED ALSQGMESLQ  240
QTLADTLSSG TLGSSSSDNV ASYMGQMAMA MGQLGTLEGF IRQADNLRLQ TLQQMLRVLT  300
TRQSARALLA IHDYSSRLRA LSSLWLARPR E*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295150.0BT029515.1 Arabidopsis thaliana At3g12250 mRNA, complete cds.
GenBankAJ3205400.0AJ320540.1 Arabidopsis thaliana mRNA for transcription factor TGA6 (AtbZIP45 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486920.10.0PREDICTED: transcription factor TGA6 isoform X1
RefseqXP_010486919.10.0PREDICTED: transcription factor TGA6 isoform X1
RefseqXP_010464985.10.0PREDICTED: transcription factor TGA6 isoform X2
RefseqXP_010464983.10.0PREDICTED: transcription factor TGA6 isoform X2
SwissprotQ391400.0TGA6_ARATH; Transcription factor TGA6
TrEMBLM4F1220.0M4F122_BRARP; Uncharacterized protein
TrEMBLA1A6J50.0A1A6J5_ARATH; At3g12250
STRINGBra034767.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.20.0TGACG motif-binding factor 6