PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0418s0021.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 279aa    MW: 31211.2 Da    PI: 6.8786
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0418s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-0582104123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C+ C+k Fs++  L  H++ H
  Cagra.0418s0021.1.p  82 YACHFCKKGFSTSQALGGHQNAH 104
                          89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-778109No hitNo description
Gene3DG3DSA:3.30.160.603.0E-580108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7882109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MENQAMSSSS SSTPKPEKLK SILVVMEESK ERETRDTNLK LGSPQEEVTS EKRMENPCFG  60
SGPVRRGREI MKLYPSKSNK VYACHFCKKG FSTSQALGGH QNAHKQEREW DKKRKEMEAD  120
FPGLAFLNPY LDKPHLLLGG YSQDALSNEN HLGITLDPFK RLVYPSFNGG VTGGIADMNM  180
AVVPRVTPTR FFPGNSSTNG FASMFPNPPL PKRHCPLTSR NVFPFSPPQT TNLSRDVVPQ  240
ENVLRERDFI SLIGRNNVVE IDDDEPEEEH DIDLTLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0418s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289398.10.0uncharacterized protein LOC17881961
TrEMBLR0FJL20.0R0FJL2_9BRAS; Uncharacterized protein
STRINGCagra.0418s0021.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-131C2H2 family protein