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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0338s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GeBP | ||||||||
Protein Properties | Length: 393aa MW: 43428.8 Da PI: 6.0216 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 124.7 | 4.2e-39 | 144 | 236 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +fqrlwseeDei+lLqG+idfka++g+sp+dd+++f++ kk+isf+vsk+q+++Kir+LK+K+++k +k +++fsk+hd+k++ l Cagra.0338s0014.1.p 144 RFQRLWSEEDEISLLQGMIDFKAEKGTSPYDDMNGFFDEYKKCISFNVSKTQFSDKIRSLKNKYRGKDNK----GDKTFSKSHDEKCLRL 229 79*******************************************************************9....7789************ PP DUF573 92 skkiWgs 98 ++ iWgs Cagra.0338s0014.1.p 230 ANCIWGS 236 *****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-30 | 145 | 235 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MPKKLLNPLE DPPTASSSEE EEVEHSSSED EEQISNPSSE EDEPKDPATE TLKTPSPAKP 60 AVSLSSGSET GSDSESEPAE KTVAVTAAKS KKKKSDVSTP VKSGKKRGSE ATTSTNTKEH 120 AKRAKKVSGD EEKKNVVQVD KKPRFQRLWS EEDEISLLQG MIDFKAEKGT SPYDDMNGFF 180 DEYKKCISFN VSKTQFSDKI RSLKNKYRGK DNKGDKTFSK SHDEKCLRLA NCIWGSDSLA 240 LNSAVKSPVK SKKVDTKKKK KKLESEVEDE DKEVLGSDAM ALESVAVKAN GNGKKVESLK 300 PEGEKVEEDN EVMILDGDSE SSNLFENSFL IRSIVSLGLD EYSVKQKWSK MPIETKKRIE 360 EKLKMVKAME YKLVVQKADV VKQVASVINE AV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297863.1 | 0.0 | hypothetical protein CARUB_v10013903mg | ||||
TrEMBL | R0G5T3 | 0.0 | R0G5T3_9BRAS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00238.1 | 7e-62 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0338s0014.1.p |