PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0133s0118.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 364aa    MW: 40161.7 Da    PI: 4.9324
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0133s0118.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573941.6e-2973163398
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          ++rlw++ De+v+L+G+++++++tg++  +d  af+e++k+ i++k+sk+qlv+Ki++LK Kf+++  k     +psf++++d+++f+ls
  Cagra.0133s0118.1.p  73 SKRLWTKADELVILKGIVNYQKDTGVDNLSDSAAFFEYIKDDIDAKFSKDQLVNKIKKLKFKFRDNLVK-----KPSFANSQDSETFDLS 157
                          79***************************************************************9999.....9*************** PP

               DUF573  93 kkiWgs 98 
                          + iWg+
  Cagra.0133s0118.1.p 158 MAIWGK 163
                          ****95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-2374162IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVNKKRLCSG DGFSETYTCD LEFRLNNSNG FLPPSPPDSP VLNSPDNLDS SNATLLKTRK  60
KRKATLPSYA PDSKRLWTKA DELVILKGIV NYQKDTGVDN LSDSAAFFEY IKDDIDAKFS  120
KDQLVNKIKK LKFKFRDNLV KKPSFANSQD SETFDLSMAI WGKDKAGCVD GNTARAKRTR  180
SKVQAFVEHE VVTNGEPEND DGLAEGGDSF DKLPSENPDK IMENENGGKE SEEDGAVTNN  240
MGNETGGKEG EEEGAVTKGK PENNLLSVNA DDKRVEKESS EKGSEEDGAA DELCALQDAL  300
ETTVFQHLGS YAQKQMLEKL KTLRAKERKE LSGEWKSLLV EEALFKSKKY SFTAKLANAA  360
FHN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456860.11e-174PREDICTED: uncharacterized protein LOC104738348 isoform X1
TrEMBLD7L7077e-69D7L707_ARALL; Putative uncharacterized protein
STRINGscaffold_300912.12e-68(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1743558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.12e-23DNA-binding storekeeper protein-related transcriptional regulator