PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0007s0045.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 413aa    MW: 45061.5 Da    PI: 7.0174
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0007s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.71.4e-36421412104
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ss 67 
                          +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak++i+el+++                        + 
  Cagra.0007s0045.1.p  42 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELAELppwnpadairlaaanakprrtsakT- 130
                          79**************************************************************6555444444444333322221111. PP

                  TCP  68 ssaseceaesssssasnsssgkaaksaakskksqksa 104
                                                    + +++++++++
  Cagra.0007s0045.1.p 131 --------------------------QISPSPTPQQQ 141
                          ..........................11111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3242139IPR005333Transcription factor, TCP
PROSITE profilePS5136934.01644102IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MADEFLHPPP PSSMRHRATS EAADGGCGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR  60
RVRLSAHTAI QFYDVQDRLG FDRPSKAVDW LIKKAKTSID ELAELPPWNP ADAIRLAAAN  120
AKPRRTSAKT QISPSPTPQQ QQPQLQFGVG FDGGGTEHPT NNDNDSSFLP PSMDSDSIAD  180
TIKSFFPVVG SSTEAPPNHQ LIHNYHHPPD LLSRTNSQNQ DLRLSLHSFP DGPPSLLHHH  240
NHTSASASEP ALFYGQSNPL GFDTSSSVSW EQQSSEFGRI QRLVAWNSGA TDTGNGGGFL  300
FAPPPPSFQP VLGQSQSQQL YSQRGPLQSS YSPMIRAWFD PHQHHQSIST DDLNHHHHLP  360
PPVHQSAIPG IGFASGEFSS GFRIPARFQG QEEEQHDGLN HKPSSASSIS RH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankAY1499570.0AY149957.1 Arabidopsis thaliana At3g15030/K15M2_17 mRNA, complete cds.
GenBankAY0944440.0AY094444.1 Arabidopsis thaliana AT3g15030/K15M2_17 mRNA, complete cds.
GenBankAP0003700.0AP000370.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K15M2.
GenBankAK3167040.0AK316704.1 Arabidopsis thaliana AT3G15030 mRNA, complete cds, clone: RAFL06-89-F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297817.10.0hypothetical protein CARUB_v10013851mg
SwissprotQ8LPR50.0TCP4_ARATH; Transcription factor TCP4
TrEMBLR0HYP10.0R0HYP1_9BRAS; Uncharacterized protein
STRINGscaffold_301743.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.30.0TCP family protein