PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g14670
Common NameGSCOC_T00032026001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 176aa    MW: 19391.6 Da    PI: 9.9175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g14670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.9e-061591850
                 HHHHHHHHHHHHHHHHHCTSCC.C...................................TTS-.STCHHHHHHHHHH CS
          HLH  8 rErrRRdriNsafeeLrellPk.as................................kapskK.lsKaeiLekAveY 50
                  Er RR+++++ +++L +ll + as                                k +++   s a+ + +Av+ 
  Cc11_g14670 15 TERHRRQQMKNLYSKLASLLLPpASevnlplpalldyslthvknlkeriqeleakkeKFKGQIgSSTADFVLQAVKI 91
                 6*******************995657777777777777777777777776666666555555555556666666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.286759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-7977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-71574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MQAGNLKPRI PRGVTERHRR QQMKNLYSKL ASLLLPPASE VNLPLPALLD YSLTHVKNLK  60
ERIQELEAKK EKFKGQIGSS TADFVLQAVK IIEKGPILEV NLETGLHKRF ILPEVISILE  120
EGGAQVLSAS YATLTDRVLY TISSEASSPR IGIETSRLHE RLKALAGTGC FFCSL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095620.11e-124transcription factor bHLH168-like
TrEMBLA0A068TVW91e-123A0A068TVW9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13045318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.19e-25bHLH family protein