PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g13820
Common NameGSCOC_T00032134001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 283aa    MW: 30530.9 Da    PI: 6.6821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g13820genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.6e-11165212455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Cc11_g13820 165 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 212
                  8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.73E-11159216No hitNo description
SuperFamilySSF474591.03E-17159228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-18161229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-8165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDPQASYNLG CDTAAYNLAE IWPFPMNNGP GPGASAATSF HNTNDFVATM SMNMNVNSGV  60
NRDRDPMVME QAPNPTPNSS GGGGVRRRRD DDEAVKGVSN SSNGNAMKAC DSKKLKTAGA  120
HENREAEAEG EANSGKAAEP SPKPAEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER  180
MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNSRLS PGIEGFPSKD  240
FGQQPFDSSG MAFASQAVRE YARGTSPDWL HMQIGGGFER SS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238742.11e-114PREDICTED: transcription factor bHLH79
RefseqXP_006357229.11e-114PREDICTED: transcription factor bHLH79 isoform X1
RefseqXP_015076833.11e-114PREDICTED: transcription factor bHLH79
SwissprotQ9LV172e-69BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A068TW600.0A0A068TW60_COFCA; Uncharacterized protein
STRINGSolyc05g006650.2.11e-114(Solanum lycopersicum)
STRINGPGSC0003DMT4000582041e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-79BIG PETAL P