PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g13150
Common NameGSCOC_T00032218001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 413aa    MW: 44132 Da    PI: 7.5034
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g13150genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.91e-3978201389
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 
                  +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++           
  Cc11_g13150  78 PKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSISAPlirnsylnqnl 175
                  799*****************************************************************999767777777763333355565566666 PP

          TCP  89 .........................k 89 
                                            
  Cc11_g13150 176 gisqlrameeshlqqqrrifypgvsL 201
                  66666544444444444444444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-4081253IPR005333Transcription factor, TCP
PROSITE profilePS5136926.94783137IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSMDADNAHL VVNAIRRSNF PLQLLEKRDL HQPSNCSTSI YPTLAIGSNS TTSTTPVDAA  60
ETSGADRPEA AANKKTQPKR TSTKDRHTKV EGRGRRIRMP ATCAARVFQL TKELGHKSDG  120
ETIEWLLQQA EPAVIAATGT GTIPANFTSL NISLRSSGSS ISAPLIRNSY LNQNLGISQL  180
RAMEESHLQQ QRRIFYPGVS LSSAENNNSS MSLNFPSESM NVNDMLHAKQ EVRDQAACLD  240
VSDRRIKRRP DEEDLTCLQN HIGNYMVQSS SGSIAASHQG QVQAAAFLMV TNNPSNTSTS  300
QLMRGPDSLW TFPSSMTGTN HNLLHRGGGA SMSSNGLHFM NFPTSMALLP GVHGANNGGG  360
SSGVFEGQSG MIAALNSLRP AVPGGGASEA NLHLGGEEDW HDATTSTTTH HS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097019.10.0transcription factor TCP15-like isoform X1
TrEMBLA0A068TWI90.0A0A068TWI9_COFCA; Uncharacterized protein
STRINGXP_010258392.11e-107(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28822351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.13e-45TCP family protein