PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g11360
Common NameGSCOC_T00032454001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 554aa    MW: 59024.7 Da    PI: 5.6462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g11360genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09369417355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Cc11_g11360 369 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 417
                  58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.20E-11364421No hitNo description
SuperFamilySSF474597.2E-17364435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16367433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6369417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDMAEKDNIG PEKRNEDLLN YQSSNMPSEW QLSGNSLSNA SMGLISSGNL EQPSSSNAAV  60
IDSLCPTMWE QSLSAQNLGF NDNNVQHNTS TSNALGNRAG GLGPLRAGLD SLVGMGMGWT  120
PPNAMLKGGM FLPGAPGYLP QTLAHFPADS GFIERAARYS CFSGGNFSEL INPFNASDSM  180
NPYAGGLASM LGSQEALMGN GLNLTSEMQP PKNEMNMTES SKHVSFPTEC GPSEGIPLKN  240
EKKSESLVRS HDEAKGGVGA SGNDSDEAEF SGRGGQEELD AADGESTPKG IGSKKRKRCG  300
QDSEHNQKKG SSQQAAEVPN DGTEVQKKGD QNPTSSKPGG KNGKQGPQAS GSPKEEYIHV  360
RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV  420
EFLSMKLATV NPRLDFNIEG LLAKDVLQTR AGPSSLTFPP DMSMAYPQLH QSQQGMVQAG  480
LHGLGSPSDV LRRSINSPLT NVSGNLKEPS SHVPNVWEDE LHNIVQMGLN SSVPLSSEDI  540
SGSLAPGHMK AEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287296PKGIGSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895269.10.0PREDICTED: transcription factor bHLH49
TrEMBLA0A068TYR50.0A0A068TYR5_COFCA; Uncharacterized protein
STRINGPOPTR_0010s14600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-120bHLH family protein