PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g11290
Common NameGSCOC_T00032465001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 197aa    MW: 22565 Da    PI: 6.2307
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g11290genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.63.2e-1482136559
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                  +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN+ L+++l++ ++  +++
  Cc11_g11290  82 RKQRRMISNRESARRSRMRKQRHLDELWSQVLRLRTENHNLIDKLNHVSESHDRV 136
                  79********************************************998876655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-1678142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.94480143IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-1282155No hitNo description
PfamPF001708.6E-1282134IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-1382132No hitNo description
CDDcd147022.93E-2083134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MIPSEATGIH YFTPEDPSPF TPNFSLMHSS FPAFQISRLL TNLPNYQSPP PIHEFTPQSS  60
CLSNNSTSDE ADDQQLNVID ERKQRRMISN RESARRSRMR KQRHLDELWS QVLRLRTENH  120
NLIDKLNHVS ESHDRVVQEN ARLKEEASDL RQMLTDFQLG SPYNTLSDLE ELPCNTAHLR  180
AESSNQSIAA TTNLLH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095835.11e-142basic leucine zipper 43-like
SwissprotQ9FMC21e-39BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A068TW221e-141A0A068TW22_COFCA; Uncharacterized protein
STRINGXP_009774323.15e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-52basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]