PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g08200
Common NameGSCOC_T00034425001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 312aa    MW: 35126.9 Da    PI: 4.5666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g08200genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11145188654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Cc10_g08200 145 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 188
                  589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15142208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-12145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9145188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-15146206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-4146192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEFYSEHNFL EELLALRSEP WEGSVPMGLM NHDFYSNVFG SDLAADELSP PELTDSSCNK  60
LDTPQFPSQE DLSIMDDDDQ GLFAGNNNSV QSLELVRPPL CKVEELQEPF QSAEALVPLF  120
NMGMVCPERK NNKSKKLNGQ PSKNLMAERR RRKRLNDRLS MLRSVVPKIS KMDRTSILGD  180
TIDYMKELLE RINNIQEEKD VVSNQASLMS IFKDVKPNEV LVRNSPKFDV ERRNSDTRIE  240
ICCSGKPGLL LSTLTTLEAL GLEIQQCVIS CFNDFTVQAS CSEELEQRGI LSSEDIKQAL  300
FRNAGYGGRC L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147154ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089827.10.0transcription factor bHLH93-like
SwissprotQ9LSL12e-85BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A068TXG90.0A0A068TXG9_COFCA; Uncharacterized protein
STRINGXP_010275502.11e-126(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.18e-76beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]