PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g07710
Common NameGSCOC_T00034488001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 143aa    MW: 15296.5 Da    PI: 5.5808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g07710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000684322355
                 HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55
                 L+el+P +    +k   Ka +L + ++Y++sLq
  Cc10_g07710  4 LQELVPGC----NKITGKAVMLDEIINYVQSLQ 32
                 999****9....899*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.667131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-9247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-10449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MRLLQELVPG CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN VDLDRIFQKD  60
ILHSRGSSAA TVGIGPGLNS SHPFPGYPQG SFPGISGAAA PFHPVPQAVW DNELQSILQM  120
GFDTSPSINN LGPNAGRSKL EL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356834.12e-72PREDICTED: transcription factor bHLH74
RefseqXP_015168609.12e-72PREDICTED: transcription factor bHLH74
RefseqXP_015168610.12e-72PREDICTED: transcription factor bHLH74
RefseqXP_015168611.12e-72PREDICTED: transcription factor bHLH74
RefseqXP_016435691.18e-73PREDICTED: transcription factor bHLH74-like
SwissprotQ6NKN98e-50BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A068TXG21e-101A0A068TXG2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000125915e-72(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.15e-51bHLH family protein