PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g06180
Common NameGSCOC_T00034693001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 186aa    MW: 20955.2 Da    PI: 5.3356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g06180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-1659105151
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                  ++y GVr++  +gr++AeIr p++   + r++lg+f+taeeAa a++ a  
  Cc10_g06180  59 TRYLGVRRRQ-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDLASI 105
                  5799***887.**********865...5*******************9965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-2760124IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1860118IPR016177DNA-binding domain
PfamPF008476.2E-960105IPR001471AP2/ERF domain
PROSITE profilePS5103220.48160118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-2560117IPR001471AP2/ERF domain
CDDcd000189.76E-2561117No hitNo description
PRINTSPR003672.8E-86172IPR001471AP2/ERF domain
PRINTSPR003672.8E-88399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSFASINYKP RSFWFLGSRS LNTYTYCLAS QEKPGPNNME NFSQMVARDQ GRRSSRRSTR  60
YLGVRRRQWG RYAAEIRNPY TKERHWLGTF DTAEEAAVAY DLASISFSGI QKARTNFVYP  120
FLALPSPSPS PPSPPPPPPP TPDLEEVDQS CAEVSSFEDD DDESLFIASV LESFRQSSFD  180
GTQKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1449121275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027092344.11e-109ethylene-responsive transcription factor LEP-like
TrEMBLA0A068U0M51e-133A0A068U0M5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000565279e-48(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-28ERF family protein