PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g06050
Common NameGSCOC_T00034718001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 363aa    MW: 40571.1 Da    PI: 6.6335
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g06050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-1177107333
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 
                  ++k+ rr+++NReAAr+sR+RKka++++Le+
  Cc10_g06050  77 SDKVLRRLAQNREAARKSRLRKKAYVQQLET 107
                  5899*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.002675128IPR004827Basic-leucine zipper domain
PfamPF001703.2E-978108IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-779111No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-781119No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PfamPF141442.5E-27165238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MMNMASSTQF APSRRMGIYD AVQQMSMWED TFRAHMTPDT GVSIFTKADP SLSSKSECTS  60
KEPLIPPIES QATRSISDKV LRRLAQNREA ARKSRLRKKA YVQQLETSRL KLAQLELEID  120
RARQQGACIG GAVANVGFTG SINPGIAAFE MEYGHWVDEQ QKKTSELRNL LQSPISDLEL  180
EMVVDNLLNH YHDLFRMKAD AAKADVFYLV SGVWRTSVER FFQWIGGFRP SELVNILMPA  240
LEPLTDQQLV DVCNLRHSCQ QAEDALSQGI DKLQQNLAQS IAADPMVVGN YGSQMASSIE  300
DLEALETFVN QADHLRQQTL QRMSSLLTTR QAARGLLAFG EYFQRLRALS SLWAARPHDA  360
AA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00247DAPTransfer from AT1G77920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090078.10.0transcription factor TGA7-like
RefseqXP_027090079.10.0transcription factor TGA7-like
SwissprotQ93ZE21e-151TGA7_ARATH; Transcription factor TGA7
TrEMBLA0A068TY620.0A0A068TY62_COFCA; Uncharacterized protein
STRINGXP_009776929.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-153bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]