PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc10_g02500
Common NameGSCOC_T00024754001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 442aa    MW: 47788.2 Da    PI: 8.3619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc10_g02500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.2e-053323701255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Cc10_g02500 332 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 370
                  7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.706320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-5330374No hitNo description
SuperFamilySSF474591.13E-10330381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-9334377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MESTSKIPHH HRHLQQQHPL QGHQLVGSSS TSTTTLGASG FGAALSSHAW TPNTNLNSAG  60
FGSAANTAIL NSRNPRLQND ILVSSLNGSM TQDFSFSWAN GSSGNNFTNQ SSHDLQLEMI  120
KREFSESYSN FSEMISSPSS SIEDVQLPIQ ATDYRRSEYR EINDPNVKLL LRSLSSGDRN  180
NDFHRSCPGE LYCSTSSSSS LGATPKRGTF SQIYPTINVS EINQTSLANS SSFHMNSQAL  240
DLLNSARFSG IFCLPMVDQL GLSKNGSLSY GYDYLSQSIP MPISEPSNIT PLSNGVTETK  300
WSDISLEPKV PQAAPKRSRS ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM  360
EAIGYIKFLQ NQVETLSVPY LKSSRNKSSR TVHGGAVENG GEERKRDLRS RGLCLVPMSC  420
LSYVADGGGG VWPPPSFGGG T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281118.21e-145PREDICTED: transcription factor bHLH110 isoform X2
TrEMBLA0A068UFY40.0A0A068UFY4_COFCA; Uncharacterized protein
STRINGVIT_18s0001g12970.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75332227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-67bHLH family protein