PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc09_g04320
Common NameGSCOC_T00017441001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 219aa    MW: 23868.8 Da    PI: 8.3882
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc09_g04320genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.66.9e-4681071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh++FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k
  Cc09_g04320   8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHRVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLSCAK 105
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  Cc09_g04320 106 SE 107
                  87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.2017108IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-458105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HRVFGASNVT KLLNELQPHQ  60
REDAVNSLAY EADMRLRDPV YGCVGVISLL QHQLRQLQMD LSCAKSELSK YQSLGITSHG  120
LIAAAAAAAT ATTHHHHHPQ NLGINFIGGG GSGREQYYHH QFFPRDQQQV IRAFDGGNNY  180
DASSLLAMNV SASIGQLSQF QHPRAAGGDG RRTPIEPS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266137.11e-124PREDICTED: LOB domain-containing protein 6
RefseqXP_010646844.11e-124PREDICTED: LOB domain-containing protein 6
RefseqXP_010646845.11e-124PREDICTED: LOB domain-containing protein 6
RefseqXP_010646846.11e-124PREDICTED: LOB domain-containing protein 6
SwissprotO044793e-88LBD6_ARATH; LOB domain-containing protein 6
TrEMBLA0A068U6K91e-163A0A068U6K9_COFCA; Uncharacterized protein
STRINGVIT_00s0340g00090.t011e-123(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.45e-88LBD family protein