PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g01730
Common NameGSCOC_T00038341001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 275aa    MW: 30277.2 Da    PI: 5.2643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g01730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-1289131754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Cc08_g01730  89 MAERRRRKKLNDRLYMLRSIVPKiS------KMDRASILGDAIEYLKEL 131
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.71382131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1785147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-1088131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-1488137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1689144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.61E-1289135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MLEGDDGVKS GKKNERSKRN DVEGELEDVD DISCLNYDSD EVNLNSNVDR GPNEGNDGAG  60
DNWNVGDINA VTNGDEKGKK KGPPAKNLMA ERRRRKKLND RLYMLRSIVP KISKMDRASI  120
LGDAIEYLKE LLQRINDLHH ELEATPSGSL LEQTSSFHPL TPTLPTLPCC VKEELNSSSL  180
PSPKSNQPAR VEVRLREGRA VNIHMFCARR PGLLLSTISA LDNLGLDIQQ AVISCFNGFA  240
LDVFRAEQCR EGQDILPEQV KAVLLDSAGY HGVM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17896KKKGPPAKNLMAERRRRKK
29097ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489049.11e-123PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-110ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A068UXZ00.0A0A068UXZ0_COFCA; Uncharacterized protein
STRINGPOPTR_0015s11650.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27032452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.45e-96bHLH family protein