PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g00740
Common NameGSCOC_T00038473001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 215aa    MW: 23512.4 Da    PI: 9.0382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g00740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18655255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                 +++GVr++  +g+Wv+eIr+p        kr++lg+f tae Aa+a+++a+  ++g
  Cc08_g00740  6 KFRGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEAAARAYDEAAILMNG 55
                 89****999.**********8.....335**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-32564IPR001471AP2/ERF domain
CDDcd000184.24E-20665No hitNo description
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-20664IPR016177DNA-binding domain
SMARTSM003802.6E-39669IPR001471AP2/ERF domain
PfamPF008473.1E-11655IPR001471AP2/ERF domain
PRINTSPR003672.7E-10718IPR001471AP2/ERF domain
PRINTSPR003672.7E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVPSRKFRGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE AAARAYDEAA ILMNGQNAKT  60
NFPVVKENPN EPSPKTSTDH QDSPPLSVTA PPAESLSEIL SAKLKKCCKD PAPSLTCLRL  120
DNSQIGVWQK RTGRHSGSNW VLKVELGKNK DHQNSTQQAS LCSSSSTTTA TTTSSSSGSS  180
TTSSVGMDEE NRVAMQMVEE LLNWNCPPPY LTNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027083095.11e-128ethylene-responsive transcription factor WIN1-like
SwissprotQ3E9581e-67SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A068UZ341e-157A0A068UZ34_COFCA; Uncharacterized protein
STRINGXP_004136348.12e-77(Cucumis sativus)
STRINGXP_004162048.12e-77(Cucumis sativus)
STRINGXP_009758054.14e-77(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.27e-57ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]