PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g19520
Common NameGSCOC_T00018562001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 274aa    MW: 28300.7 Da    PI: 10.1452
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g19520genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.33.3e-39341352105
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaaks 97 
                  a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  +++s ++s+++ s++     ++k+
  Cc07_g19520  34 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvSPASARNSVGTLSAP----LDHKP 127
                  789*************************************************************9999988877777777777744444....33333 PP

          TCP  98 kksqksaa 105
                   ++q++++
  Cc07_g19520 128 PSQQHQQQ 135
                  33333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-3340147IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8924094IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSSASADGNG NGNGAIIDPS QRVTSSNNGS AALAVKKPPA KDRHSKVDGR GRRIRMPIIC  60
AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSTVSPA SARNSVGTLS  120
APLDHKPPSQ QHQQQPLIAP TPFILGKRLR SSNEDDSINE KDDASAAAAA ATVVGSAALG  180
GGFWALPARP DLGQVWSFAA AAAQPEMVVP TLNAPQQSGM ARFLQQSTSM GEASAARVGN  240
YLPIAHQGHL NLLASLSGPP PPPSSEQREG DAR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075523.10.0transcription factor TCP7-like
SwissprotQ9FMX25e-80TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A068U7Q10.0A0A068U7Q1_COFCA; Uncharacterized protein
STRINGSolyc04g009180.1.13e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-57TCP family protein