PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g15790
Common NameGSCOC_T00036426001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 361aa    MW: 40962.4 Da    PI: 7.1024
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g15790genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.4e-1176106434
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                  +k+ rr+++NReAAr+sR+RKka++++Le+ 
  Cc07_g15790  76 DKVLRRLAQNREAARKSRLRKKAYVQQLENS 106
                  7999*************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.0E-869120No hitNo description
SMARTSM003383.2E-673144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.63475117IPR004827Basic-leucine zipper domain
PfamPF001704.8E-876110IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.34E-677116No hitNo description
PROSITE patternPS0003608095IPR004827Basic-leucine zipper domain
PfamPF141445.5E-30163238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MHSTTTQYVA SRRMGLYEPM HPIGMWGDFK GNGCPNASAS TILQVETNLD NQSEDTSHGT  60
LGTPSKYDQE ASKPVDKVLR RLAQNREAAR KSRLRKKAYV QQLENSRLRL VQLEQELDRA  120
RQQGLYAAGG LDISQLTCSG ALNSGSAAFE VEYGRWVEEQ NRQVNELRNA LHSHMSEEEL  180
RLLVDGGINH YFDLFRMKET AAKADVFYLM SGMWKTCVER LFLWIGGFRP SDLLKILSQH  240
IQPLSDEQVL NVYHLTHACQ QAEDALSQGM DKLHQFLAES VCRAQLREVN YPQMEAAIEN  300
LEALERFVKQ ADHLRQATLQ QMSGILTIRQ SARGLLAMGE YFERLRTLSS LWTKRNSEPA  360
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074141.10.0TGACG-sequence-specific DNA-binding protein TGA-1A-like
SwissprotP142321e-165TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A068TYL90.0A0A068TYL9_COFCA; Uncharacterized protein
STRINGevm.model.supercontig_100.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-161bZIP family protein
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]