PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g10760
Common NameGSCOC_T00037077001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 266aa    MW: 29055.7 Da    PI: 8.8566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g10760genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.0002835691046
                 HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLek 46
                 + RR+++N+ f+eL  +l + +      K++ a+i+  
  Cc07_g10760 35 KLRRNELNEHFQELGNILDTdS---VRLKNDEATIVIS 69
                 78****************9944...6666766666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-62699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-63597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVDCQSDISD SRQEDDLDSN GAVVAKTRHQ AHGKKLRRNE LNEHFQELGN ILDTDSVRLK  60
NDEATIVISP IQALKDLASE VSRLQSEQAA IRQDIKKLAK ENKELREKTS LQFDVGAFEV  120
QRQQRHRSMF PRSAIDPSAV MACAFSYPVA QSVSSGPYPR HTPSLHPKPF LANQSAVPSD  180
PGVMMILRSA AATPHINKPS SRNASTPCIF GKEIARNGSS GQDRSGNGEK SGDIPDMVTD  240
LELAIPGSTA QKPLPRDKGK RPLRD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068U2R00.0A0A068U2R0_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-30bHLH family protein