PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g08110
Common NameGSCOC_T00040174001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 329aa    MW: 35912.6 Da    PI: 7.9732
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g08110genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09241283855
                  HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  Cc07_g08110 241 AAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 283
                  569*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-14231293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12232291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.307233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-11235287No hitNo description
SMARTSM003537.5E-12239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-7243283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MELVKDHAPK RSTLCLIQPH PHYENDQFRE VSQNAFPGLS SSDKSTGIPR NFGVTSPSSL  60
SSPSSTNSDG LGYQQGIKTL PEDGNSVINF RGVYGDFANA GGSLLSFDHS QNSFPGIITT  120
QDDYSVWEDN LHFTYQDQLN NSRCSTPNPR PLENSNNNQS SSSYASTSNG VPFGWHSTEV  180
NANASKNNSI QDLGRQEACT SAKRPYTEES TQALKKQCTS VTKTTALKSK STPSKDPQSV  240
AAKNRRERIS ERLKILQDLV PNGSKVDLVT MLEKAISYVK FLQLQVKVLA TDEFWPAQGA  300
KAPDLSQVKE AIDAILASQR DRNSSSSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075614.10.0putative transcription factor bHLH086
RefseqXP_027078703.10.0putative transcription factor bHLH086
TrEMBLA0A068U2K10.0A0A068U2K1_COFCA; Uncharacterized protein
STRINGVIT_14s0006g01470.t011e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-57ROOT HAIR DEFECTIVE6