PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g07810
Common NameGSCOC_T00040141001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 361aa    MW: 39679.8 Da    PI: 5.9496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g07810genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-12193236654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Cc07_g07810 193 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 236
                  589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14190249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9193236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-5194241No hitNo description
Gene3DG3DSA:4.10.280.101.9E-14194255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00315286349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEHTDQTQNG LLEEFLVAPK LDSYWTTFPG GGIEIFPNGW NCESFDRNDH NQDLLTSNPN  60
SNSLLGLLSS PAALLAAGSH ESGFAFPFGE STSYPFLDHV GDGFSTAVPE LGSSYDRSNF  120
DSLPPVPIQQ DYGEGMVEHG GNLGLRGLQE GKGFCKVEVE QPTATSIGAS RVGLCGDKRS  180
KIKKAEGQPS KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDTI DYMKELLDKI  240
HKSREESTEE NINQLTKIGN LKQLKPNEVV ARNPPKFDVE RRSVDTRIEI CCTAKPGMLL  300
STVSTMEALG LDIQQCVISC FNDFSVQASC SEVAEHRRIV GSEDVKQALF RNAGYGGRCL  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183KRSKIKK
2195202ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047694.11e-122DNA binding protein, putative isoform 1
TrEMBLA0A068U2H50.0A0A068U2H5_COFCA; Uncharacterized protein
STRINGVIT_00s1312g00010.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.17e-84beta HLH protein 93