PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g04540
Common NameGSCOC_T00039710001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 281aa    MW: 31058.2 Da    PI: 4.5198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g04540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.4e-0527593155
                 ...........TTS-STCHHHHHHHHHHHHHHH CS
          HLH 31 s........kapskKlsKaeiLekAveYIksLq 55
                 s        k++++K +Ka+ L ++++YI+ Lq
  Cc07_g04540 27 SsqkvkvegKGNDQKRDKASFLLEVIQYIQFLQ 59
                 346666666899********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.7E-83878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-63884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVRTSKSRQE DDDFDDEEFA SSTPENSSQK VKVEGKGNDQ KRDKASFLLE VIQYIQFLQE  60
RIQMYEETYQ GWNQEPSKLI PWRSNSGLIE NFVDQPLLMR NGSGHEDNII VSPTLLSNAQ  120
TAMDSELNGA PLCTPTDHPQ QSGNEENSSN LLVQPNLFHV VSTQPPQGSF PDPEHLATHS  180
PSEYWQGKLT ASECAVPSYK TSQREQLHPD SGEASISNVY SQGLLNTLKH ALQSSGVDLS  240
QVNISVQLDV GKRTNEGTAS TVIREVSSAF FTPLSISLKM *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027076362.10.0transcription factor BIM2-like isoform X1
TrEMBLA0A068U2E30.0A0A068U2E3_COFCA; Uncharacterized protein
STRINGXP_009594724.18e-75(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89471821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-37BES1-interacting Myc-like protein 2