PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g04300
Common NameGSCOC_T00039684001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 408aa    MW: 44365 Da    PI: 7.0937
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g04300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.75.1e-31631872105
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........... 88 
                   g+kdrhsk++T +g+RdRRvRls+++a +++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ s+  + + + +++++  g           
  Cc07_g04300  63 FGGKDRHSKVCTVRGLRDRRVRLSVPTAVQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLQMPPGSFNHSFQPVWATHHPVVGahqvtkdqglr 160
                  689*************************************************************7777644433444444443333333333334455 PP

          TCP  89 ..........kaaksaakskksqksaa 105
                            ++ +s+++++k+ +s+a
  Cc07_g04300 161 igasinwgdhDHHPSEPSGSKTWDSDA 187
                  555555555533333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-2865175IPR005333Transcription factor, TCP
PROSITE profilePS5136931.20665123IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MIAREIDAAA DVTAKQEGNT ATDEKTSNYK ASISGTSAAA ASSSSSSWSR LKDPRIVRVS  60
RAFGGKDRHS KVCTVRGLRD RRVRLSVPTA VQLYDLQDRL GLSQPSKVVD WLLNAAKHEI  120
DELPPLQMPP GSFNHSFQPV WATHHPVVGA HQVTKDQGLR IGASINWGDH DHHPSEPSGS  180
KTWDSDAILR PKSKELIARS GDSSEDKETW TRSSEEGKQH SNNYESTSHG AAYFSSNNFF  240
SRLGHSTSPS LGLLNSTVLP YNSLIRWDPS NLSLSQSGSP SGLTPVPQPE DFHNFSVVPL  300
PSTMSVPSGG PQVLLYQPAS SITQSYFPSH IAPPVTVDYA QKQIEFQMLN STTENPLTSS  360
LAPPVSDSTS QHAAGRPFRI LSTTTNLLPS QNDRESKQDL DNDFSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1770124155Putative transcription factor PCF6
5zkt_B4e-1770124155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073406.10.0transcription factor TCP5-like
RefseqXP_027073407.10.0transcription factor TCP5-like
RefseqXP_027073408.10.0transcription factor TCP5-like
TrEMBLA0A068U1B60.0A0A068U1B6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-44plastid transcription factor 1