PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g03070
Common NameGSCOC_T00039522001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 471aa    MW: 53491.9 Da    PI: 8.1309
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g03070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14145204155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a+ k++g
  Cc07_g03070 145 SRFRGVSRHRWTGRFEAHLWDkLSWNIaqkKKgKQVYLGAYDDEEAAARAYDLAAIKYWG 204
                  789******************888855665447*************************98 PP

2AP2521.7e-16248299155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Cc07_g03070 248 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 299
                  89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-11145204IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-16145213IPR016177DNA-binding domain
PROSITE profilePS5103219.599146212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-15146212IPR001471AP2/ERF domain
SMARTSM003802.7E-24146218IPR001471AP2/ERF domain
PRINTSPR003673.8E-5147158IPR001471AP2/ERF domain
PfamPF008476.3E-12248299IPR001471AP2/ERF domain
CDDcd000182.06E-24248309No hitNo description
SuperFamilySSF541718.5E-18248309IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-18249308IPR001471AP2/ERF domain
PROSITE profilePS5103218.953249307IPR001471AP2/ERF domain
SMARTSM003802.7E-26249313IPR001471AP2/ERF domain
PRINTSPR003673.8E-5289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MHPSGSKSYA FDSLGWQRVE LVTTHCLSSN LLPFVALIAC ICCLFVNRQF YSWRGSEKKE  60
KQNPSDTRRP MSTFIKSEEN PGRRRMCTAD AGAPDGRSVK RRRRDQQTAA ADAFPLACPG  120
QQMQQQQLEQ LVDLSSAPTT VKRSSRFRGV SRHRWTGRFE AHLWDKLSWN IAQKKKGKQV  180
YLGAYDDEEA AARAYDLAAI KYWGTSTFTN FPITDYEKEI ETMQTVTKEE YLASLRRQTA  240
LNLFYRVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAARAY DIAAIEYRGI  300
NAVTNFDLST YIRWLKPGVN PAASAQESEP IIHPQTPPSH DFRAGETNQS FIFQRSFSTG  360
DLNKEEICER QLPVYSCNKS SSPTALGLLL RSSIFRELVA KNSIVSDEEN DSESGKVQPQ  420
VVNDEYLAEM FDDGNGATPF GVTSESYGID LEEPFRFNYD CLENPLQTRL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
182103RRRMCTADAGAPDGRSVKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027152657.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A068U1Q40.0A0A068U1Q4_COFCA; Uncharacterized protein
STRINGXP_008230978.11e-160(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-76AP2 family protein