PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g19820
Common NameGSCOC_T00022862001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 119aa    MW: 13608.1 Da    PI: 4.8555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g19820genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-1173100330
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                  + h+e+ErrRR+riNs +++Lr+llP +
  Cc06_g19820  73 QQHKEAERRRRERINSHLDKLRTLLPCN 100
                  68************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.48770118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.05E-870101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-973100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-874100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MQPQDLSENL DLYDYLAGTT SFSDAGAYCL PRNYDFQGVA QTQSLYNNTS FYSLEMSDVT  60
ESSPEARALA ASQQHKEAER RRRERINSHL DKLRTLLPCN TKLIDSRFIT FSWLENLM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17883ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271836.18e-30PREDICTED: transcription factor bHLH106-like
TrEMBLA0A068UCL93e-84A0A068UCL9_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-14bHLH family protein