PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g15180
Common NameGSCOC_T00030868001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 448aa    MW: 46370.7 Da    PI: 6.9298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g15180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.2e-12231276555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Cc06_g15180 231 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 276
                  99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-17224285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-13224280No hitNo description
PROSITE profilePS5088817.39226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16228285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9231276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MQAMNSLLNQ QLHDLQNGQQ QQHHHHFDST TSSHDDFLEQ MLSSISTASW PAPDLIKTQP  60
PWDPLSQTPL GSLEDQSVLL ANKLRQHQIG GAKALMLHQQ LMLPRGLAGN GLRSPPGPNG  120
GLLAMPPLNL AGNGDQNEVI VDGSPFKSAN PGNDASVQAL YNGFTGQAST QPQHFHHPQG  180
GAMQAQNFGA QAMNQAAASG SMGTAGGGGT AAAQPRQQRV RARRGQATDP HSIAERLRRE  240
RIAERMKALQ ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA VAPLAADMSS  300
EGGGDCGNGR SSNGTQTASS SNNNNNDGMT VTEHQVAKLM EEDMGSAMQY LQGKGLCLMP  360
ISLATAISTA TCHSRNPMHP GLTGNGANNP LLGLGGGASG NGVGEAGGPS SPSMSVLTVQ  420
SATMVNGGGG PGGEPSSVKD AASVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067899.10.0transcription factor bHLH66-like
SwissprotQ9ZUG93e-95BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A068UPR80.0A0A068UPR8_COFCA; Uncharacterized protein
STRINGVIT_11s0037g00040.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-64LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]