PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g14450
Common NameGSCOC_T00041255001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 329aa    MW: 37466.6 Da    PI: 8.3388
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g14450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.6e-1343102155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n    k+ ++ +l  ++ +e Aa a++ a++k++g
  Cc06_g14450  43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQDYLRAYDDEEAAAHAYDLAALKYWG 102
                  57*******************999955656446*************************98 PP

2AP252.41.3e-16145196155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Cc06_g14450 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 196
                  89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-1543111IPR016177DNA-binding domain
PfamPF008475.6E-943102IPR001471AP2/ERF domain
PROSITE profilePS5103218.75544110IPR001471AP2/ERF domain
SMARTSM003807.5E-2144116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-1344111IPR001471AP2/ERF domain
PRINTSPR003673.5E-64556IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18145206IPR016177DNA-binding domain
PfamPF008474.0E-12145196IPR001471AP2/ERF domain
CDDcd000184.95E-24145206No hitNo description
PROSITE profilePS5103218.189146204IPR001471AP2/ERF domain
SMARTSM003804.6E-25146210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17146205IPR001471AP2/ERF domain
PRINTSPR003673.5E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTKISQQNQR NNSNLGNGIN NSAIKVKRTR KTVPRDSPPQ RSSIYRGVTR HRWTGRYEAH  60
LWDKNCWNES QNKKGRQDYL RAYDDEEAAA HAYDLAALKY WGQDTTLNFP LATYQKELKE  120
MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAAIAYDMA AIEYRGLNAV TNFDLSRYIK WLRPNATNST TTSAAIAEPN PNVDTNFMPT  240
PDQMLASSSI YHPQTEQQPQ PLDITTDITL NQSRPASATS ALGFIPDDAQ SFFTTPDMGS  300
YIDQSQEDIF SELINPFMQP MLQFDFDV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065220.10.0AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN41e-103AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A068U5G00.0A0A068U5G0_COFCA; Uncharacterized protein
STRINGXP_009793520.11e-151(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-97AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]