PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g13190
Common NameGSCOC_T00041433001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 508aa    MW: 54741 Da    PI: 8.2181
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g13190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.4e-11148205255
          AP2   2 gykGVrwdkkrgrWvAeIrd.pse.ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GV++++++gr++A+++d  +   g  ++ r  +  ++ +e+Aa+a++ a++k++g
  Cc06_g13190 148 IFRGVTRHRWTGRYEAHLWDnTCRrEGqsRKGRQGICGYDKEEKAARAYDLAALKYWG 205
                  69******************6555544765566677779999**************98 PP

2AP247.35.3e-15248299155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cc06_g13190 248 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 299
                  57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-13147215IPR016177DNA-binding domain
CDDcd000187.45E-17147215No hitNo description
Gene3DG3DSA:3.30.730.106.0E-12148214IPR001471AP2/ERF domain
SMARTSM003802.2E-20148219IPR001471AP2/ERF domain
PROSITE profilePS5103216.397148213IPR001471AP2/ERF domain
PfamPF008471.3E-8148205IPR001471AP2/ERF domain
PRINTSPR003678.3E-6149160IPR001471AP2/ERF domain
CDDcd000187.09E-25248309No hitNo description
SuperFamilySSF541717.19E-18248309IPR016177DNA-binding domain
PfamPF008476.5E-10248299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-18249307IPR001471AP2/ERF domain
SMARTSM003807.9E-34249313IPR001471AP2/ERF domain
PROSITE profilePS5103219.045249307IPR001471AP2/ERF domain
PRINTSPR003678.3E-6289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDSSHPNWLA FSLSNHPLFE AFNSLTSSSG AVVRAEEDNG NNGASVTAAA DLSTVLNCSS  60
PKLEDFLGGG SNGSCSSADV CQFGGGNQTS ALINADVYDS ELKSIAASFL RGYSTEQAES  120
QKQLAAVPLA PEPPAKKAVE TFGQRTSIFR GVTRHRWTGR YEAHLWDNTC RREGQSRKGR  180
QGICGYDKEE KAARAYDLAA LKYWGPTTTT NFPVSNYEKE LEEMKHMTRQ EFVASLRRKS  240
SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL  300
NAVTNFDISR YDVKSIASSN LPVGGISNNK SNNNNKTSSD SLSDNKSADG SNRSDDRDHS  360
SATSVSFVSQ PSTSALGFGL PIKQNTPSTS DFWSSLGYHN NNVTAKIPTP TAIPLFQNPM  420
YFQQQHQHQQ SNVLGGGGGN GNGTGTNSSS PSEQVPFVTR IALSSSNGTG STYDAANFGN  480
WISPTLHSFQ PAKPNLSVFQ TPIFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068737.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-149AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A068U4A00.0A0A068U4A0_COFCA; Uncharacterized protein
STRINGcassava4.1_004734m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-133AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]