PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g08310
Common NameGSCOC_T00031148001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 195aa    MW: 21772.7 Da    PI: 8.5813
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g08310genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY209.61.1e-64111676170
        YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse..kl 101
                   +eq+Cy+ CnfCn +lavsvP +slf vvtvrCGhCt+l svn+a a q l+++s  +     ++++++ +  ++++    ++ +  + ++++  ++
  Cc06_g08310  11 PPEQLCYIPCNFCNIVLAVSVPCSSLFDVVTVRCGHCTNLWSVNMAAAFQSLSSSSCWQ-----DVQAQNSTPPDQYRIDFGSSAKGYNIKPATrpSI 103
                  689*************************************************9999633.....3333333334444444333333333333320023 PP

        YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  ++  +e       v+rPPekrqrvPsayn+fikeeiqrika+nPdi hreafs+aaknWahfP+ihfgl
  Cc06_g08310 104 PNRAEER-----IVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDINHREAFSTAAKNWAHFPHIHFGL 167
                  3333333.....379****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-7011167IPR006780YABBY protein
SuperFamilySSF470955.5E-8106160IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.0E-4121159IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSSCSDVSPP PPEQLCYIPC NFCNIVLAVS VPCSSLFDVV TVRCGHCTNL WSVNMAAAFQ  60
SLSSSSCWQD VQAQNSTPPD QYRIDFGSSA KGYNIKPATR PSIPNRAEER IVNRPPEKRQ  120
RVPSAYNQFI KEEIQRIKAN NPDINHREAF STAAKNWAHF PHIHFGLMLE TNNKPKLGED  180
SEKRLTPRTA LLNK*
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066017.11e-144axial regulator YABBY 5-like
RefseqXP_027175450.11e-144axial regulator YABBY 5
SwissprotQ8GW461e-81YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A068UPF71e-143A0A068UPF7_COFCA; Uncharacterized protein
STRINGVIT_11s0016g05590.t011e-104(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-84YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]