PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g01040
Common NameGSCOC_T00023310001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 162aa    MW: 17684.2 Da    PI: 9.6879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g01040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.6e-104284754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  + r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  Cc06_g01040 42 VAARERRHRISERFKILQSLVPGG-----SKMDTVSMLEEAIHYVKFL 84
                 56799*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3893584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-143997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-123988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.43E-133988No hitNo description
SMARTSM003531.4E-124190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-74384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEGSSLRDRR SCALASNGKD KKGGGKRPAG KAAKLSTDAQ SVAARERRHR ISERFKILQS  60
LVPGGSKMDT VSMLEEAIHY VKFLKTQIWL HQTMINFVDT DPSLPLPSAY HLPANQADDL  120
YSRLNMQGDQ TNALAALPQL GFAYSGPLCG ESISLDKTFL Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066217.11e-118transcription factor bHLH87
SwissprotQ9M0417e-29BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A068UFP51e-116A0A068UFP5_COFCA; Uncharacterized protein
STRINGVIT_08s0058g00110.t015e-42(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117141723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-30APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]