PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g00950
Common NameGSCOC_T00023300001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 539aa    MW: 60499.3 Da    PI: 4.5636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g00950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS133.13.1e-411565373374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL++ Aea++ g+ ela+ + +r+se +sp gd+++Rl  y+  AL ++              +++s    ++  +a+k+f++++P  kf+h++aN 
  Cc06_g00950 156 HLLMAYAEAMEMGQEELAEVIAKRISEKVSPVGDTVERLLYYMFHALDKQSDY----------LKQES---AKNFYQAFKAFYQIFPNGKFAHFAANL 240
                  89*********************************************998665..........33333...67899999******************* PP

         GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLa..sRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledl.. 189
                  aIle++  + +++ i Dfdi++G+QW++L++a+   +R+    s++    ++++ +       + e  +++L+++A++ g+++  + +   +l+dl  
  Cc06_g00950 241 AILESLPDDaDTIRIFDFDIGEGIQWASLIEAIGhqCREVTLTSVKFAEGEDAAMDanplTMWRFEDAKKQLSDYARSYGLKLMVDEV---ELADLvg 335
                  ******8877***********************94455566666666655555544888889999********************998...3333323 PP

         GRAS 190 eleeLrvkp......gEalaVnlvlqlhrlldesvsles.....erdevLklvks......lsPkvvvvveqe..adh.nsesFlerflealeyysal 267
                  el++++ ++      +  l+ n+++ l ++ + +   +      + +++L+lv         +  v+++ + +   +  n++++   +   + +y al
  Cc06_g00950 336 ELKNISNRKqgssgrRQFLVFNCMVGLPHMGRVRSRRDVfeflqASQSFLQLVHAsaacgnYKGGVITFGDGDawEKVrNTSTYGSFLDGNMAHYQAL 433
                  45555544455555699************995444433344454788999999752222225778******9943233599999999999******** PP

         GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgW 362
                  ++s++ ++p++  e+r+ +E+ +++++++++  +e+ e r+r  +          +G++ ++ls +  ++ak ++r+ +   g r++ e+++++v+ W
  Cc06_g00950 434 LESIKLNFPSHLgEARTAMENLFVAPSVSSLAWAEKWEERKRYGQ------LELGFGLEGLKLSRESLMEAKEVVREGEsLYGVRMQgESHNEMVMDW 525
                  *********999899*********************995555553......3356999********************988889988899******** PP

         GRAS 363 kdrpLvsvSaWr 374
                  ++ p+v vS+Wr
  Cc06_g00950 526 RGTPMVRVSCWR 537
                  ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.869128515IPR005202Transcription factor GRAS
PfamPF035141.1E-38156537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MTESQIFQPS WPYFRHDNNL NSILDNVRED GFCGGGEYTC YPLPTLMEES YLETSMLQER  60
CANFPVHLDG DMDITTEDVL VYFEDPISID GQITDVSMSP EESKGGNCIH SCHQISMPSS  120
SMRSSHAASL DVTSMPSSLV LPAEGVELDN ELAAFHLLMA YAEAMEMGQE ELAEVIAKRI  180
SEKVSPVGDT VERLLYYMFH ALDKQSDYLK QESAKNFYQA FKAFYQIFPN GKFAHFAANL  240
AILESLPDDA DTIRIFDFDI GEGIQWASLI EAIGHQCREV TLTSVKFAEG EDAAMDANPL  300
TMWRFEDAKK QLSDYARSYG LKLMVDEVEL ADLVGELKNI SNRKQGSSGR RQFLVFNCMV  360
GLPHMGRVRS RRDVFEFLQA SQSFLQLVHA SAACGNYKGG VITFGDGDAW EKVRNTSTYG  420
SFLDGNMAHY QALLESIKLN FPSHLGEART AMENLFVAPS VSSLAWAEKW EERKRYGQLE  480
LGFGLEGLKL SRESLMEAKE VVREGESLYG VRMQGESHNE MVMDWRGTPM VRVSCWRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027173088.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A068UE030.0A0A068UE03_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.19e-14GRAS family protein