PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g13180
Common NameGSCOC_T00021097001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 235aa    MW: 25774.2 Da    PI: 8.1905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g13180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.9e-1178125454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++  rE++RRdr+N++f eL  ll +    + +K +Ka+iL  Av+ + +L
  Cc05_g13180  78 SKACREKQRRDRLNDKFVELGALLDPG---RPPKTDKAAILVDAVRIVTQL 125
                  5678**********************8...89*************999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.17374125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1376144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-977130No hitNo description
Gene3DG3DSA:4.10.280.103.5E-1378148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-878125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-880131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVSPENTNWL YDYAFEDIAV PDGNFPASAS GFNWPVQTLN GSSNVSVEID GSLGDSDGPK  60
ETGSRKRLRT ESCASTSSKA CREKQRRDRL NDKFVELGAL LDPGRPPKTD KAAILVDAVR  120
IVTQLRTEAQ KLKDSNLSLQ EKIKELKAEK NELRDEKQRL KGEKEKLEQQ LKTVNTQASF  180
MPPPTMPAPF AAQGQAPGNK LVPIISYPGV AMWQFMPPAA VDTSQDHVLR PPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360098.11e-141PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-117ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A068UBG21e-173A0A068UBG2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000495921e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9502482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-91bHLH family protein