PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g13180
Common NameGSCOC_T00021097001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 235aa    MW: 25774.2 Da    PI: 8.1905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g13180genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.47.9e-1178125454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++  rE++RRdr+N++f eL  ll +    + +K +Ka+iL  Av+ + +L
  Cc05_g13180  78 SKACREKQRRDRLNDKFVELGALLDPG---RPPKTDKAAILVDAVRIVTQL 125
                  5678**********************8...89*************999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.17374125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1376144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-977130No hitNo description
Gene3DG3DSA:4.10.280.103.5E-1378148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-878125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-880131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVSPENTNWL YDYAFEDIAV PDGNFPASAS GFNWPVQTLN GSSNVSVEID GSLGDSDGPK  60
ETGSRKRLRT ESCASTSSKA CREKQRRDRL NDKFVELGAL LDPGRPPKTD KAAILVDAVR  120
IVTQLRTEAQ KLKDSNLSLQ EKIKELKAEK NELRDEKQRL KGEKEKLEQQ LKTVNTQASF  180
MPPPTMPAPF AAQGQAPGNK LVPIISYPGV AMWQFMPPAA VDTSQDHVLR PPVA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027062574.11e-173transcription factor ILR3
SwissprotQ9FH371e-116ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A068UBG21e-172A0A068UBG2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000495921e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9502482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-91bHLH family protein
Publications ? help Back to Top
  1. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  2. Aparicio F,Pallás V
    The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response.
    Mol. Plant Pathol., 2017. 18(2): p. 173-186
    [PMID:26929142]
  3. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  7. Samira R, et al.
    The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis.
    Plant Mol. Biol., 2018. 97(4-5): p. 297-309
    [PMID:29882068]