PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g12920
Common NameGSCOC_T00021126001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 477aa    MW: 52053.6 Da    PI: 6.9686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g12920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.66.9e-063674051154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Cc05_g12920 367 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 405
                  5778999**********998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.468356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-12366424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-6366409No hitNo description
Gene3DG3DSA:4.10.280.104.0E-9366414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0064367411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MADEFQVGSG SWWDSSTSSR TRFDRGSTAA ASTSVNSSIN MGSFGWPTEI VAARSSMDSS  60
VSMSGGSMLF PPAVDHSSQK LQAHESSSAG GSGEGSMLPD PNLQIMGLAL SSQTMDWNQA  120
ALFRGEKAQS SFRSMLQEDA STNFQQESGV TSSQDHQWRH KLYAGSPDDS SVITEFKPMN  180
QRGLSLDQPQ FSSNMSSSNS TITCQGLSPN FQVESASYAA SPNSILQGLL VPDHHHQQQQ  240
QSMNYSYPTS YGMESTSNQL MPSNSWSKFP QFLRNSPPKQ QPPHGQLHFS NNTPFWNASS  300
TGMSDVRSSL FPPLQTQLPM PNFEEKSKNA SEVRDLPVAK KSSSSSSAPS NKRPRNETPA  360
PMPAFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHDQVN VLSTPYMKSG  420
APMQHQQNPD KSKDPEGPKQ DLRSRGLCLV PVSSTFPVTH ETAVDYWTPT FGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226756.11e-180PREDICTED: transcription factor bHLH123
TrEMBLA0A068UC310.0A0A068UC31_COFCA; Uncharacterized protein
STRINGPOPTR_0011s13320.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-73bHLH family protein