PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g08060
Common NameGSCOC_T00016815001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TCP
Protein Properties Length: 324aa    MW: 35926.8 Da    PI: 7.6075
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g08060genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.4e-3625124190
          TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaessss 80 
                  a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++                  +              
  Cc05_g08060  25 ATGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELphnhpneislmaapstdsN-------------- 108
                  589**************************************************************5555554444444332221.............. PP

          TCP  81 sasnsssg..........ka 90 
                      ++s+          ++
  Cc05_g08060 109 ----PGSAsgcqgfeqrsES 124
                  ....1111122232221111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3226133IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7932886IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKRAGGGGDG QGEIIQVQGG HILRATGRKD RHSKVYTSKG PRDRRVRLSA HTAIQFYDVQ  60
DRLGYDRPSK AVDWLIKKAK NAIDKLAELP HNHPNEISLM AAPSTDSNPG SASGCQGFEQ  120
RSESSSLYAI QRHQLHDNPN GNSGVIPPEV DTQSIADTMK TFFPVSPGNS LMNMQSYQHD  180
RMSRQPSIQT EDLGLSLHSL QDQNLNHRSY TEQMLFSGSN STMNIGFIFN PHSMPVPQQL  240
IFSQNSAFSQ REPLQSNYSH LFHAWNERQM PSVDHHNAQA ISQSSMYNIH FGSDFQVPAR  300
IRGDEEPGVV SLQPSSVSPS SQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-223386154Putative transcription factor PCF6
5zkt_B4e-223386154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063409.10.0transcription factor PCF5-like
RefseqXP_027063410.10.0transcription factor PCF5-like
RefseqXP_027127404.10.0transcription factor PCF5-like
RefseqXP_027127405.10.0transcription factor PCF5-like
TrEMBLA0A068V5450.0A0A068V545_COFCA; Uncharacterized protein
STRINGcassava4.1_031505m1e-103(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-52TCP family protein