PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g07320
Common NameGSCOC_T00042259001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 225aa    MW: 25493 Da    PI: 6.529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g07320genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.4e-101562554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                   ++E++RR+++++ +++L  l+P++   +sk  l+  +   +A++YIks+
  Cc05_g07320 15 RRIVEKNRRSHMKDLYARLYGLVPSD---SSKEnLTVPDQIDEAINYIKSM 62
                 5799*********************7...55555***************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-11979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.3761062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.37E-51262No hitNo description
Gene3DG3DSA:4.10.280.101.6E-111376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-61563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MERFHPSTSN PKMERRIVEK NRRSHMKDLY ARLYGLVPSD SSKENLTVPD QIDEAINYIK  60
SMEKKLEKCK EKKEKLLFGK RPYSGATGET TKITNVEVHD MGPNLDVILL NGLEEQASFY  120
GIIRLLCKEG FEVVNANFSS NGNSVLQVVH DKGGISTSRT ETTAVAKRLK ELIYGYSRGE  180
VESRLDSWVE SRLGPWDFEI EPDILNSNVL ELMSPGQFCF LQQL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A068V1Z51e-167A0A068V1Z5_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-19bHLH family protein