PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc05_g07310
Common NameGSCOC_T00042258001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 217aa    MW: 24601.9 Da    PI: 6.4067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc05_g07310genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-061562554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                 + + E++RR++ ++ +++L +llP++    sk  l   +   ++++YIks+
  Cc05_g07310 15 KRIKEKNRRNHFKNLYSQLYSLLPSD---ISKEvLPVPDKIGEVINYIKSM 62
                 6789*********************9...7777799999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.5911062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.2E-81379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-61581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-41567No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MERFHPSTSN SKPEKRIKEK NRRNHFKNLY SQLYSLLPSD ISKEVLPVPD KIGEVINYIK  60
SMERKLENYK QMKEKLLGSK RRYSSTKSSE LTNVKVHDMG PDTDMILISG LKEPASFYGI  120
IHLLQEEGFE VVNANFSNDG NSMLQVVHEK GGISTSSTGT IEIAKRERLK ELIYGYSHGE  180
VESTVDSWDF EVEPDLLASG FLGPLPEGEF CFLQQH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027060957.11e-154transcription factor bHLH162-like
TrEMBLA0A068V2T01e-157A0A068V2T0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52971427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-16bHLH family protein