PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g17060
Common NameGSCOC_T00035831001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 88aa    MW: 9668.89 Da    PI: 9.5056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g17060genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.1e-0814531454
                 HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 d+iN+ + +L+ llP++ + +++++  + +L++++++I+ L
  Cc04_g17060 14 DEINNLILKLQALLPHS-GSKNRRVPASKVLQETCNHIRRL 53
                 68**************7.6899*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-81474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-51453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-81472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSRRSRGSG STEDEINNLI LKLQALLPHS GSKNRRVPAS KVLQETCNHI RRLTRDADDL  60
SERLSQLLAS NDINSLDIES IKSILGQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087225.11e-26PREDICTED: transcription factor ILI5-like
SwissprotB8APB55e-20ILI6_ORYSI; Transcription factor ILI6
SwissprotQ0DUR25e-20ILI6_ORYSJ; Transcription factor ILI6
TrEMBLA0A068UVQ62e-55A0A068UVQ6_COFCA; Uncharacterized protein
STRINGVIT_17s0000g05950.t016e-23(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-19bHLH family protein