PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g16030
Common NameGSCOC_T00042393001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 275aa    MW: 29890.8 Da    PI: 6.9137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g16030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.2e-11160207455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Cc04_g16030 160 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 207
                  8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.19E-10154211No hitNo description
SuperFamilySSF474597.46E-18154224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-18156225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDPPIVSHSS FSPAHASSSY TLTDLWPFPI GPPAVLGLPM PPALPPPHAT PPPVAALSLE  60
ESTVTDLSAC RTNATNKRKH VLSQHHLLAS ASCAVHSNNA NVKRMKASEG GIGEQIDESK  120
AEPQTSSYTT NKPADHDDTN PQPPKDYIHV RARRGQATDS HSLAERARRE KISERMKILQ  180
DLVPGCNKVI GKALVLDEII NYIQSLQRQV EFLSMKLEAV NSRMNSAIEG FPSKELAAPQ  240
LDATAMIFGQ QAPREYAPDE WLHIQVGSSF ERAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121342.10.0transcription factor bHLH79-like
SwissprotQ9LV176e-72BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A068V2M10.0A0A068V2M1_COFCA; Uncharacterized protein
STRINGXP_006476705.13e-96(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-69BIG PETAL P
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]