PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g13690
Common NameGSCOC_T00035871001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 205aa    MW: 23106.7 Da    PI: 10.1215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g13690genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.2e-081665654
                 HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                 + +Er+RR r++  ++eL +l+P+  +  psk  ls  +   ++  YI +L
  Cc04_g13690 16 KTVERNRRIRMKGLIHELTSLVPPqHFV-PSKElLSQRDQIDQVAAYIMQL 65
                 679*********************6664.5555599999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.5811065IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-81482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-71483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-51665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEINNVNDAS TKIDRKTVER NRRIRMKGLI HELTSLVPPQ HFVPSKELLS QRDQIDQVAA  60
YIMQLRERVE NLKKSKELVK SKVETKGTKS RNSAIPGSSI PIVKIREIGS NLEVVLVTGS  120
TKNFALHEVI LILEEQGVEV VSISISTMDD KICHILHAQV KVSRLGVDTS TIYDKLQKLF  180
NYDTWFGRSK MKENGVINLK GNEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579413.14e-59PREDICTED: uncharacterized protein LOC8289025
TrEMBLA0A068UVC51e-148A0A068UVC5_COFCA; Uncharacterized protein
STRINGVIT_17s0000g08150.t011e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.14e-21bHLH family protein