PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g11850
Common NameGSCOC_T00037395001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 194aa    MW: 21475.1 Da    PI: 7.8721
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g11850genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.46.7e-4510108199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+q+e+l++el++++
  Cc04_g11850  10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNELLPHQREDAVNSLAYEAEARVKDPVYGCVGAISFLQRQVERLQKELDAAN 107
                  7*********************************************************************************************9987 PP

       DUF260  99 e 99 
                  +
  Cc04_g11850 108 A 108
                  6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.6269110IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-4410107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MASSSSYNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNELLP  60
HQREDAVNSL AYEAEARVKD PVYGCVGAIS FLQRQVERLQ KELDAANADL IRYACNDHIQ  120
PELSAPHGAM HQVHQPMTPR QRPVEYNNTR RMGNEGGGFY QTPNFQYPYH LPWNDNDIHR  180
YGGGGGGGGG GHI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322187.21e-101hypothetical protein POPTR_0015s09370g
RefseqXP_011046208.11e-101PREDICTED: protein LATERAL ORGAN BOUNDARIES
RefseqXP_011046209.11e-101PREDICTED: protein LATERAL ORGAN BOUNDARIES
SwissprotQ9FML47e-75LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A068UWU91e-145A0A068UWU9_COFCA; Uncharacterized protein
STRINGPOPTR_0015s09370.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-76LBD family protein