PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g07130
Common NameGSCOC_T00022518001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family LBD
Protein Properties Length: 275aa    MW: 29571.4 Da    PI: 6.8295
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g07130genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.82e-294107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l++a p++ r+ +++sl+yeA+ r+ +P+yG++g++++++++l+q+++e
  Cc04_g07130   4 SCNGCRVLRKGCSEKCSIKPCLhwiksPEAQANATVFLAKFYGRAGLLNLINAGPDHLRPGIFRSLLYEACGRIVNPIYGSTGLLWSGNWHLCQAAVE 101
                  6************************************************************************************************* PP

       DUF260  94 lallke 99 
                  ++l ++
  Cc04_g07130 102 AVLSGS 107
                  998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4073109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-234102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEKCS IKPCLHWIKS PEAQANATVF LAKFYGRAGL LNLINAGPDH  60
LRPGIFRSLL YEACGRIVNP IYGSTGLLWS GNWHLCQAAV EAVLSGSPIS QVSADSAACT  120
VCPPLKAGDI RHVSKDENSA GSAARDLHKV KCSKGKFKRA GVKQPKVRVE SPDVDNAARV  180
MWSWSHKEEE EEEEVVGSPS RDSGVSQHVE PPSRGCECGD ADSASVETVE ESLVKPDEPA  240
DGSDVELELT LGFEPVLCRQ RKVGRQESDG GVNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630484.11e-120PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8869e-85LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A068TQW50.0A0A068TQW5_COFCA; Uncharacterized protein
STRINGSolyc03g119530.2.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-85LOB domain-containing protein 41