PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g05860
Common NameGSCOC_T00022355001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 242aa    MW: 26742.2 Da    PI: 9.2096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g05860genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-2054103255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Cc04_g05860  54 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRFKG 103
                  7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-3353112IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-2254112IPR016177DNA-binding domain
PfamPF008478.3E-1454103IPR001471AP2/ERF domain
CDDcd000185.55E-1954112No hitNo description
SMARTSM003801.4E-3754117IPR001471AP2/ERF domain
PROSITE profilePS5103224.90854111IPR001471AP2/ERF domain
PRINTSPR003671.5E-115566IPR001471AP2/ERF domain
PRINTSPR003671.5E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTAMVSALSQ VIGSTDNNNS VAVVGNYPAL ADPQPAPAIE NRAQQEQGNQ RRRHYRGVRQ  60
RPWGKWAAEI RDPKKAARVW LGTFETAEAA ALAYDEAALR FKGNKAKLNF PERVQGKTEY  120
GYLTTRQDAR VVADQQVSHS HSNRSFPPPH EYPHILQYAE LLRSGDQNNL HDEAISSSAS  180
SFPGGPLASQ SSSGSSSNMS SQEQGQQQFL QFQSPYNVGR TSSSGNSEMW EEFHNNTYAR  240
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2753114466ATERF1
3gcc_A4e-2753114466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2787400.0KF278740.1 Coffea arabica ethylene response factor 15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121625.11e-179ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH548e-51EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A068TPR81e-178A0A068TPR8_COFCA; Uncharacterized protein
STRINGVIT_17s0000g00200.t017e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]