PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g14090
Common NameGSCOC_T00031796001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 136aa    MW: 14900.2 Da    PI: 8.6265
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g14090genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-0541731855
                 HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 +++  L++l+ +      +K + a++L +A+eYI+ Lq
  Cc03_g14090 41 EKITALQQLVSPY-----GKTDTASVLLEAMEYIRFLQ 73
                 6788888888888.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-92281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.9692372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-112884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00383178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-54377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MMEHKRCPVS LDQSSLASLT PKRHKADISV LSKEKKEKVG EKITALQQLV SPYGKTDTAS  60
VLLEAMEYIR FLQEQVKVLS APYLCNTPTT TEQEQEPYSL RSRGLCLVPI SCTVGVASSN  120
GADIWAPIKT ASQKF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027117758.15e-96transcription factor bHLH153-like isoform X1
RefseqXP_027117759.13e-96transcription factor bHLH153-like isoform X2
SwissprotQ9LT672e-35BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A068UR002e-96A0A068UR00_COFCA; Uncharacterized protein
STRINGVIT_05s0094g00480.t016e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10428811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]