PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g09600
Common NameGSCOC_T00030944001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 472aa    MW: 51309.5 Da    PI: 6.3279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g09600genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09282329455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cc03_g09600 282 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 329
                  8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-17276347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-11276333No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17278347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6282329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MERENLQMPY GSGIGGFHNN ELNCSSSEVQ FQNCFFNPSW DNSLDQNDPF ESALSSMVIC  60
NSGEISPQSY LGGGNNSTNT SCYSTPLNSP PKLNLSMMDH QIRGNLPIPG HHLPSHSSFA  120
PFPTDPGFAE RAARFSSSDR KFSKLSRSST PENTEFGDSR ENSSVSEQIT TGETGNNGQN  180
DANSRKRKSI ARGKAKEPPS SSNSAKDANG ASESNESNAK RSKSGEENAD EKDATKAMAD  240
TNGTDKAAGD GNQKQNKENS KPPEAPKDYI HVRARRGQAT DAHSLAERVR REKISERMKL  300
LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TINPRMEFNA EALVSKDVLH  360
SRGSLPHNMY SSEASAAGFP YPMQPQNGTN LPSAAIPNGQ DVPFSMNHLN AAISRNQGIH  420
LPPLDNFGEA ASQIPSFLED DLHTVVQMGF GQNQTQNFHG IMPTAQMKVE L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084194.10.0PREDICTED: transcription factor bHLH78-like
TrEMBLA0A068UP280.0A0A068UP28_COFCA; Uncharacterized protein
STRINGVIT_05s0029g00390.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.16e-78bHLH family protein