PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g07740
Common NameGSCOC_T00026638001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 411aa    MW: 46237 Da    PI: 5.2165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g07740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12203254155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Cc03_g07740 203 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 254
                  79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13201257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.94E-13201258No hitNo description
SuperFamilySSF474591.83E-16202267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428202253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9203254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9208259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.12E-4336400No hitNo description
PROSITE profilePS516719.277336410IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEKEENYSGS IPGNFTGLDY TLEHHQQNQH QQLMKPQIGE VSGDDGSNQM VDYMLHNTTQ  60
QQPMSSGFCA STSLDKLSFA DVMQFADFGP KLALNQAKTP EEETVLNDSV YFLKFPVLNE  120
KLQDDPDHQA LMFPRPINEE SNSKVGEEGD QRPDQDQARG FGNTSVQLQF LGDNREKSPL  180
TTETKNKRKR PRTIKTSEEV ESQRMTHIAV ERNRRKQMNE HLRVLRSLMP GSYVQRGDQA  240
SIIGGAIEFV RELEQLLQCL ESQKRRRLYG DGPRPIGDSS SSVPIQQPQP PFFPGMPLSS  300
DQMKLVELET GLHEETAESK SCLADVEVKL LGFDALIKIL SRRRPGQLIK TIAALEDLQL  360
NILHTNITTI EQTVLYSFNV KVASEARFTA EDIANSIQQI FSFIHANSSI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203214RMTHIAVERNRR
2263267KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071156.10.0PREDICTED: transcription factor FAMA
SwissprotQ56YJ81e-147FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A068TT280.0A0A068TT28_COFCA; Uncharacterized protein
STRINGPOPTR_0001s32160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46572341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-134bHLH family protein