PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g05400
Common NameGSCOC_T00026291001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 171aa    MW: 18803.6 Da    PI: 9.254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g05400genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-202576256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr+++ +g+++AeIrdp+ +g  +r +lg+f taeeAa+a+++a+ +l+g+
  Cc03_g05400 25 RYRGVRRRP-WGKYAAEIRDPTRQG--ARLWLGTFETAEEAARAYDKAAFNLRGH 76
                 6********.**********96544..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.0142583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-322585IPR001471AP2/ERF domain
SMARTSM003804.0E-372589IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-232584IPR016177DNA-binding domain
PfamPF008471.2E-142576IPR001471AP2/ERF domain
CDDcd000186.47E-292584No hitNo description
PRINTSPR003671.2E-112637IPR001471AP2/ERF domain
PRINTSPR003671.2E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDGGSSSSRG KGMQGKEEKE KEDVRYRGVR RRPWGKYAAE IRDPTRQGAR LWLGTFETAE  60
EAARAYDKAA FNLRGHLAIL NFPNEYYSQL PSPPHYQPFS SSPSSAFSSS FLSRSSASSS  120
SSGAIQGFDQ RGSSSSSSTG QQKQVIELEY LDDSLLEELL EFGEKKKNGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-3022861175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115754.11e-120ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A068TSN01e-119A0A068TSN0_COFCA; Uncharacterized protein
STRINGXP_009780511.11e-54(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]